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Sequences
Taxonomy
MethanoGram
Phylogeny
Homology
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Blastn
Blastp
Blastx
TBlastn
TBlastx
Blastx
Translated nucleotide sequence ⇒ Amino acid database
Query sequence
Database
Protein genes - amino acid sequences
Genetic code used to translate query
-- Choose Genetic code --
Standard code
Vertebrate Mitchondrial Code
Yeast Mitchondrial Code
Mold, Protozoan, and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma Code
Invertebrate Mitochondrial Code
Ciliate, Dasycladacean and Hexamita Nuclear Code
Echnoderm and Flatworm Mitochondrial Code
Euplotid Nuclear Code
Bacterial, Archaeal and Plant Plastid Code
Alternative Yeast Nuclear Code
Ascidian Mitochondrial Code
Alternative Flatworm Mitochondrial Code
Blepharisma Macronuclear Code
Chlorophycean Mitochondrial Code
Trematode Mitochondrial Code
Scenedesmus obliquus Mitochondrial Code
Thraustochytrium Mitochondrial Code
Pterobranchia Mitochondrial Code
Cadidate Division SR1 and Gracilibacteria Code
Pachysolen tannophilus Nuclear Code
Karyorelict Nuclear Code
Condylostoma Nuclear Code
Mesodinium Nuclear Code
Peritrich Nuclear Code
Blastocrithidia Nuclear Code
Expect threshold (E-value)
Word size
Scoring Matrix
-- Matrix --
PAM 30
PAM 70
PAM 250
BLOSUM45
BLOSUM50
BLOSUM62
BLOSUM80
BLOSUM90
Gap opening penalty score
Gap extension penalty score
Filtering low complexity regions
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